Gapfill plugin

Note: This plugin requires InfluxDB 3 Enterprise.8.2 or later (uses the synchronous write API).

The Gapfill Plugin detects gaps in time series (spacing between consecutive points wider than a threshold) and fills them with imputed values using standard missing-data imputation methods. Fill points land on an epoch-anchored time grid strictly inside each gap, so overlapping runs are idempotent. It works both on uniform-grid data (for example, the output of the resampler plugin) and directly on irregular raw series, and supports two modes of operation: continuous scheduled filling and one-off historical repair over HTTP.

• Detects and fills in one pass: a gap is any inter-point spacing greater than gap_threshold; detection runs per numeric field, so a field that goes missing while others keep reporting is still filled — non-numeric fields are carried onto fill points by last known value
• Standard imputation methods: linear, previous (LOCF), next, nearest, cubic spline, PCHIP (monotone cubic, no overshoot at gap edges), constant
• Two output modes: materialize the full series into a target measurement (pipeline mode), or append only fill points into the source (in-place repair)
• Bounded imputation: gaps longer than max_fill_gap are never invented, only reported

Unlike SQL date_bin_gapfill, which fills gaps at query time, this plugin materializes a continuous series that downstream consumers — dashboards, other plugins such as signal_filter — read as physical points, with more fill methods, optional marking of imputed points, and a per-gap quality report.

Configuration

Plugin parameters may be specified as key-value pairs in the --trigger-arguments flag (influxdb3 create trigger) or in the trigger_arguments field of the API. Values are strings; the plugin coerces them. Alternatively, supply every parameter from a TOML file via config_file_path — see TOML configuration. For the HTTP trigger, parameters are passed as a JSON request body.

Plugin metadata

This plugin includes a JSON metadata schema in its docstring that defines supported trigger types and configuration parameters, enabling the InfluxDB 3 Explorer UI to display and configure the plugin.

Shared parameters (scheduled args and HTTP body)

Scheduled-only parameters

HTTP-only parameters

TOML configuration

Set the PLUGIN_DIR environment variable and reference the file with the config_file_path trigger argument (relative paths resolve against PLUGIN_DIR, then INFLUXDB3_PLUGIN_DIR, then the parent of VIRTUAL_ENV). The TOML file then supplies all parameters — it is mutually exclusive with inline trigger arguments. See gapfill_config_scheduler.toml for an annotated template.

Output modes

• Chain mode (target_measurement set): the full series — existing points plus fills — is written to the target measurement each run, so downstream consumers read one continuous measurement. Raw data is never modified.
• In-place repair (target_measurement omitted): fill values are appended into the source measurement. Filling is per field, so a fill may land on a timestamp where other fields already hold real values — the missing field’s value (and the marker, when enabled) is added to that point; existing values are never modified.

Every value is written with the source column’s stored type: integer fills are rounded and UInt64 stays uint, so output never conflicts with the schema. Blending methods (linear, cubic, pchip, constant) produce float64, so in chain mode those columns — fills and copied values alike — become float in the target; in in-place mode such fills are cast back to the column’s type.

Gap report

With report_measurement set, each detected gap produces one row:

• Tags: the series tags plus gap_field (the field the gap was detected in).
• Fields: gap_start_ns, gap_end_ns (boundary timestamps), duration_s (float seconds), points (fill points actually written for the gap; 0 when skipped), status (filled, or skipped when the gap is longer than max_fill_gap or no point could be written).
• Timestamp: the gap end, so re-reporting the same gap overwrites in place.

Report rows are written next to the output: with target_database set they land in that database, not in the trigger’s.

Alerting on this measurement (for example, with the notifier plugin) turns gapfill into a sensor-health monitor.

Data requirements

• Existing timestamps are never changed: fills are added on the epoch-anchored grid, existing points keep their original time. The output is continuous but not uniform — run resampler first when downstream consumers need an exact grid.
• On jittery raw data, raise gap_threshold above the expected jitter (the default is 1.5× interval), otherwise normal spacing is detected as gaps and imputed points appear between healthy readings.
• Detecting a gap requires both its boundary points inside one run’s query window (quantified below), so a longer outage is neither filled nor reported. Repair those with the HTTP trigger over an explicit range, and alert on them with a deadman check (e.g. threshold_deadman_checks).
• A gap is filled only after it closes (a point arrives on its right side); an ongoing outage is not extrapolated.
• A series/field needs at least 2 points to be processed; cubic needs at least 4 (falls back to linear with a warning).
• Visibility costs reads: each run queries three times the range it processes (the range plus lookback padding on both sides). A scheduled run processes window + max(window, max_fill_gap), so window=10min without max_fill_gap reads about 60 minutes of history per run. HTTP backfill batches are padded the same way.

Software Requirements

• InfluxDB 3 Enterprise: with the Processing Engine enabled (--plugin-dir configured).
• Python packages: scipy and influxdata-plugin-utils (numpy is installed with scipy).

Installation steps

1. Start InfluxDB 3 Enterprise with the Processing Engine enabled (--plugin-dir /path/to/plugins):

   influxdb3 serve \
     --node-id node0 \
     --object-store file \
     --data-dir ~/.influxdb3 \
     --plugin-dir ~/.plugins

2. Install the Python dependencies into the plugin environment:

   influxdb3 install package "influxdata-plugin-utils>=0.3.0"
   influxdb3 install package scipy

Trigger setup

Scheduled trigger (continuous pipeline)

influxdb3 create trigger \
  --database mydb \
  --plugin-filename gh:influxdata/gapfill/gapfill.py \
  --trigger-spec "every:1m" \
  --trigger-arguments 'source_measurement=signal_resampled,target_measurement=signal_filled,interval=1s,method=linear,max_fill_gap=1min' \
  gapfill_signal
influxdb3 enable trigger --database mydb gapfill_signal

HTTP trigger (one-off historical repair)

influxdb3 create trigger \
  --database mydb \
  --plugin-filename gh:influxdata/gapfill/gapfill.py \
  --trigger-spec "request:gapfill" \
  gapfill_backfill
influxdb3 enable trigger --database mydb gapfill_backfill

curl -X POST "http://localhost:8181/api/v3/engine/gapfill" \
  -H "Authorization: Bearer $INFLUXDB3_AUTH_TOKEN" \
  -H "Content-Type: application/json" \
  -d '{
    "source_measurement": "sensors",
    "interval": "15s",
    "method": "pchip",
    "backfill_start": "2026-07-18T00:00:00Z",
    "backfill_end": "2026-07-19T00:00:00Z"
  }'

Expected response (fills appended in-place, since target_measurement is omitted):

{
  "status": "ok",
  "task_id": "…",
  "batches": 1,
  "rows_scanned": 5730,
  "gaps_filled": 12,
  "gaps_skipped": 0,
  "fills_written": 96,
  "rows_copied": 0
}

Example usage

Example 1: Fill outage gaps after resampling (pipeline mode)

With signal_resampled on a 1s grid containing 10–30s outage holes:

influxdb3 create trigger \
  --database mydb \
  --plugin-filename gh:influxdata/gapfill/gapfill.py \
  --trigger-spec "every:1m" \
  --trigger-arguments 'source_measurement=signal_resampled,target_measurement=signal_filled,interval=1s,max_fill_gap=1min,mark_filled=true' \
  gapfill_signal
influxdb3 enable trigger --database mydb gapfill_signal

influxdb3 query --database mydb \
  "SELECT time, value, filled FROM signal_filled ORDER BY time DESC LIMIT 10"

Expected output: a continuous 1s series in signal_filled; timestamps that were missing in signal_resampled carry interpolated values and filled=true, copied real points have filled null.

Example 2: Constant fill for an event counter

A gap in an event-rate series means “no events”, not “interpolate”:

influxdb3 create trigger \
  --database mydb \
  --plugin-filename gh:influxdata/gapfill/gapfill.py \
  --trigger-spec "every:5m" \
  --trigger-arguments 'source_measurement=events_per_min,interval=1min,method=constant,fill_value=0' \
  gapfill_events
influxdb3 enable trigger --database mydb gapfill_events

Expected output: zero-valued points appended in-place at missing minutes.

Example 3: Gap report for sensor-health monitoring

influxdb3 create trigger \
  --database mydb \
  --plugin-filename gh:influxdata/gapfill/gapfill.py \
  --trigger-spec "every:1m" \
  --trigger-arguments 'source_measurement=sensors,interval=15s,max_fill_gap=2min,report_measurement=gapfill_report' \
  gapfill_sensors

influxdb3 query --database mydb \
  "SELECT * FROM gapfill_report WHERE status = 'skipped' ORDER BY time DESC"

Expected output: one row per gap with boundaries, duration, and status; skipped rows mark outages too long to impute — alert on those.

Code overview

Files

• gapfill.py: The main plugin code containing the handlers for scheduled filling and HTTP backfill
• gapfill_config_scheduler.toml: Example TOML configuration file

Logging

Logs are stored in the _internal database in the system.processing_engine_logs table. To view logs:

influxdb3 query --database _internal \
  "SELECT * FROM system.processing_engine_logs WHERE trigger_name = 'gapfill_signal' ORDER BY event_time DESC LIMIT 20"

Main functions

process_scheduled_call(influxdb3_local, call_time, args)

Entry point for the scheduled trigger. Loads and validates the configuration, then fills a sliding window of history ending at call_time - offset.

process_request(influxdb3_local, query_parameters, request_headers, request_body, args)

Entry point for the HTTP trigger. Repairs [backfill_start, backfill_end) in batch_size chunks, resolving the schema once, and returns the run totals.

run_gapfill(...)

One pass over a time range: resolves the schema, queries the padded window, groups rows by tag set, fills each series (and copies existing points in chain mode), and writes the result with retries.

fill_series(...)

Detects gaps of one series per numeric field, computes fill values on the epoch grid, attaches carried fields by last known value, and builds the gap report rows.

Troubleshooting

Common issues

Issue: “required packages are not installed”

Cause: The plugin environment lacks scipy or influxdata-plugin-utils.

Solution: Run influxdb3 install package "influxdata-plugin-utils>=0.3.0" and influxdb3 install package scipy, then re-enable the trigger.

Issue: Field type conflict on write

Cause: The chain-mode target measurement already contains a field whose stored type conflicts with the plugin’s output (blending methods write float64; another producer may have created the column as integer).

Solution: Use a fresh target measurement, or a selection method (previous, next, nearest), which preserves source types. In-place mode preserves integer column types by rounding fills.

Issue: No fills appear

Cause: The gap has not closed yet (no point on its right side), the gap is longer than max_fill_gap or the lookback, or the series/field has fewer than 2 points.

Solution: Check the info logs for skip counts; increase max_fill_gap or repair the range explicitly via the HTTP trigger.

Issue: “source_measurement already has a column named ‘filled’”

Cause: mark_filled is true and the marker name (filled_field_name, default filled) is taken by a source tag or by a non-boolean field; the plugin refuses to overwrite it. In in-place mode, a boolean column of that name is treated as the plugin’s own marker from earlier runs and reused.

Solution: Set filled_field_name to a name not used by the source, or disable mark_filled. With mark_filled off, a source field named filled is processed normally.

Report an issue

For plugin issues, see the Plugins repository issues page.

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